PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.121490.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 170aa    MW: 19003.4 Da    PI: 8.4737
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.121490.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.56.4e-05621011255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  Cucsa.121490.1  62 RRGKINERLRCLQDIVPGC----YKTMGMAVMLDEIINYVQSLQ 101
                     9*****************9....3559999***********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.1E-1233112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.75650100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.87E-662105No hitNo description
SuperFamilySSF474596.67E-1263118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
NNGKEKRSKK GDTNDGEKPR EVVHVRARRG QATDSHSVAE RVRNFDLKNI NLDLFFSFTN  60
IRRGKINERL RCLQDIVPGC YKTMGMAVML DEIINYVQSL QNQVEFLSMK LTAASSYHDF  120
NSDSDAEDKL KGKEIREGNG GISMIGSSTQ LGPFDLCFGS YSTLPFNTI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819322e-58LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132662e-58LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137476.11e-104PREDICTED: transcription factor BEE 3-like
SwissprotQ8GWK72e-52BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A0A0LTN31e-103A0A0A0LTN3_CUCSA; Uncharacterized protein
STRINGVIT_17s0000g03580.t019e-65(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.23e-54BR enhanced expression 3